• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

盐肤木LBD基因家族鉴定及热胁迫下的表达分析

Identification of LBD gene family in Rhus chinensis and expression analysis under heat stress

  • 摘要: 【目的】植物侧生器官边界域(LBD,Lateral organ boundaries domain)基因家族参与植物侧生器官的形成及逆境胁迫响应等过程,是植物中所特有的一类转录因子。对盐肤木(Rhus chinensis Mill.)LBD基因家族进行全基因组鉴定和分析,为探究盐肤木LBD基因家族的生物学功能提供理论依据。【方法】基于盐肤木全基因组数据,采用生物信息学方法鉴定盐肤木LBD基因家族,并进行理化性质、保守基序、染色体定位、系统进化、共线性等分析,利用转录组数据对盐肤木不同组织部位的RcLBDs表达情况进行分析,结合启动子顺式作用元件预测结果对筛选的3个盐肤木LBD基因家族成员进行亚细胞定位及RT-qPCR分析。【结果】盐肤木全基因组中共筛选出32个LBD候选基因,根据遗传距离特征划分为5个亚家族。理化性质分析显示,该基因家族氨基酸数目介于79-697,等电点介于4.87-9.13。基因结构、保守结构域和保守基序分析发现3个重要结构域:GAS甘氨酸保守结构域、CX2CX6CX3C锌指结构和亮氨酸拉链结构。RcLBDs在染色体上呈不规则分布。基因表达分析发现,该家族基因的表达具有组织差异性。RcLBDs的启动子上存在大量与非生物胁迫、激素和生长发育有关的顺式作用元件,并基于启动子顺式作用元件分析结果筛选得到3个成员。亚细胞定位及表达模式结果发现,RcLBD16为泛定位,RcLBD19 和RcLBD23均为核定位。同时在热胁迫处理后,三者的表达量均显著上调。【结论】鉴定出32个RcLBDs基因,通过顺式作用元件预测及表达模式验证,确定了3个可能参与盐肤木热胁迫响应的重要基因,为研究盐肤木对热胁迫的抗性提供参考和数据支撑。?

     

    Abstract: 【Objective】 The LBD (Lateral organ boundaries domain) gene family, a class of transcription factors unique in plants, is involved in the formation of lateral organs and in response to stresses. Genome-wide identification and analysis of the LBD gene family in Rhus chinensis, provide a theoretical basis for exploring the biological functions of the LBD gene family in Rhus chinensis.【Methods】Based on the whole genome data of Rhus chinensis, bioinformatics methods were used to identify the LBD gene family members, and physicochemical properties, conserved motifs, chromosomal localization, phylogeny, and collinearity were analyzed. Transcriptome data were used to analyze the expression of RcLBDs in different tissues of Rhus chinensis, and the key cis-acting elements on the promoters of RcLBDs were predicted by the online database.Subcellular localization were monitored by GFP fused expression in tobacco leaves, and gene expression levels under heat stress conditions were analyzed by qRT-PCR.【Results】A total of 32 LBD candidate genes were identified in the whole genome of Rhus chinensis, which were classified into five subfamilies based on genetic distance characteristics.Bioinformatics analysis showed that the number of amino acids in this gene family ranged from 79 to 697, and the isoelectric point ranged from 4.87 to 9.13. Gene structure, conserved structural domains and conserved motifs analyses revealed three important structural domains: GAS glycine conserved structural domains, CX2CX6CX3C zinc finger structure, and leucine zipper structure. The RcLBDs were irregularly distributed on the chromosomes of Rhus chinensis. Expression analysis revealed that the expression of this gene family was tissue-specific. A large number of cis-acting elements related to abiotic stress, hormones and growth and development existed on the promoters of RcLBDs, and three members RcLBD16, RcLBD19 and RcLBD23 contained elements related to both stresses and temperature. The results of subcellular localization revealed that RcLBD16 was pan-localized, and both RcLBD19 and RcLBD23 were nuclear-localized. Meanwhile, the expression of all three members was significantly up-regulated after high temperature stress treatment. 【Conclusion】A total of thirty-two RcLBDs genes were identified in Rhus chinensis. Based on cis acting element prediction and expression pattern validation, three important genes that may be involved in the heat stress response were identified, providing reference for further studying the resistance mechanisms of Rhus chinensis upon heat stress.

     

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