• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

基于转录组的三月李及其红肉突变体Expansin基因家族鉴定及分析

Identification and Analysis of Expansins in the Transcriptome of Sanyueli Plum and Its Red-flesh Mutant

  • 摘要:
      目的  Expansin是广泛存在于植物中的一类细胞壁蛋白,通过调节细胞壁柔韧性在植物生长发育过程中发挥作用。本研究旨在分析Expansin基因家族特征及其在果实成熟过程中的表达模式,并比较Expansin基因在三月李及其红肉突变体之间的差异表达。
      方法  基于三月李及其红肉突变体果实成熟过程的转录组数据,采用生物信息学分析方法进行Expansin家族基因鉴定与分析。
      结果  鉴定出33个李Expansin基因家族成员,编码蛋白长度在176~460 aa,分子量在19.21~51.33 kD,等电点4.62~9.83,大部分为位于细胞外的稳定亲水蛋白。系统进化树分析表明李Expansin家族成员可分为4个组:22个EXPA、6个EXPB、1个EXPLA和4个EXPLB。所有李Expansin蛋白质均具有保守的DPBB_1和Pollen_allerg_1结构域。保守基序分析表明,同一组Expansin成员具有相似的基序组成。9个Expansin基因在三月李及其红肉突变体果实成熟过程中差异表达。
      结论  Expansin在三月李及其红肉突变体果实成熟过程中的表达模式存在显著差异。本研究结果可为解析李Expansin家族基因在果实成熟过程中的功能奠定基础。

     

    Abstract:
      Objective   Characteristics and expressions of Expansins, the widely existing gene family associated with plant cell wall, were studied during the fruit ripening stage to decipher the genetic functions relating to ripening of the plum fruits.
      Method   Transcriptomes of fruits of Sanyueli ( Prunus salicina Lindl.) and its red-flesh mutant were used to identify Expansin genes as well as for a bioinformatic and expression comparison of identified genes.
      Result   Thirty-three Expansins, with individual protein containing 176 to 460 amino acids, a molecular weight ranging from 19.21kD to 51.33kD, and an isoelectric point varying from 4.62 to 9.83, were identified from the fruit transcriptome data. Most of them were stable hydrophilic proteins located in the extracellular space. Phylogenetic analysis revealed that plum Expansin family included 22 EXPAs, 6 EXPBs, 1 EXPLA, and 4 EXPLBs. All of the proteins had DPBB_1 and Pollen_allerg_1 domains, and, within a same classification, they shared same conserved motif composition. Nine Expansins were differentially expressed in Sanyueli and the mutant during fruit ripening. The expressions of EVM0015785, EVM0016777, EVM0010710, EVM0022202, EVM0002390, and EVM0024996 significantly differed between Sanyueli and the red-flesh mutant.
      Conclusion   The information obtained was to be used for further study on the functions of the Expansin family during ripening of plum fruits.

     

/

返回文章
返回