• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

Message Board

Respected readers, authors and reviewers, you can add comments to this page on any questions about the contribution, review,        editing and publication of this journal. We will give you an answer as soon as possible. Thank you for your support!

Name
E-mail
Phone
Title
Content
Verification Code
Volume 39 Issue 6
Jun.  2024
Turn off MathJax
Article Contents
FANG Y, LIU C L, LIN C Q, et al. Endophytic Microbes in Root Nodules of Different Cultivars of Astragalus Sinicus L. [J]. Fujian Journal of Agricultural Sciences,2024,39(6):730−737 doi: 10.19303/j.issn.1008-0384.2024.06.012
Citation: FANG Y, LIU C L, LIN C Q, et al. Endophytic Microbes in Root Nodules of Different Cultivars of Astragalus Sinicus L. [J]. Fujian Journal of Agricultural Sciences,2024,39(6):730−737 doi: 10.19303/j.issn.1008-0384.2024.06.012

Endophytic Microbes in Root Nodules of Different Cultivars of Astragalus Sinicus L.

doi: 10.19303/j.issn.1008-0384.2024.06.012
  • Received Date: 2024-03-14
  • Rev Recd Date: 2024-05-07
  • Available Online: 2024-07-10
  • Publish Date: 2024-06-28
  •   Objective  Being crucial to the development of rhizobium inoculants and the understanding on the associated mechanisms of soil nitrogen fixation, community structure of the endophytic microorganisms in root nodules of Astragalus sinicus L. was investigated.   Method  Endophytic microbial community in the root nodules of 7 cultivars of A. sinicus planted in Fujian was analyzed with the Illumina Miseq PE300 sequencing platform using 16S rRNA as the target gene.   Result  The microbial composition of endophytic community in the nodules of the different cultivars varied. For instance, the predominant genus in ZZ5 root nodules was Pseudomonas, but it was Mesorhizobium in other cultivars. Furthermore, high Shannon indices were found in the root nodules of MZ8, XY, and ZZ5 with diverse non-rhizobial endophytes like Pseudomonas, Stenotrophomonas, Duganella, Erwinia, etc. In contrast, high relative abundances of pathogens, such as Erwinia rhapontici and Pantoea ananatis PA13 existed in the root nodules of MZ8, XY, and ZZ5.   Conclusions  Significant microbial variations in the endophytic communities were evident among the different varieties of A. sinicus planted in Fujian. The predominant genus in the root nodules of ZZ5 was non-rhizobial, growth-promoting Pesudomonas, while it was rhizobia for the other cultivars.
  • loading
  • [1]
    曹卫东, 黄鸿翔. 关于我国恢复和发展绿肥若干问题的思考 [J]. 中国土壤与肥料, 2009, (4):1−3. doi: 10.3969/j.issn.1673-6257.2009.04.001

    CAO W D, HUANG H X. Ideas on restoration and development of green manures in China [J]. Soil and Fertilizer Sciences in China, 2009(4): 1−3. (in Chinese) doi: 10.3969/j.issn.1673-6257.2009.04.001
    [2]
    谢志坚, 周春火, 贺亚琴, 等. 21世纪我国稻区种植紫云英的研究现状及展望[J]. 草业学报, 2018, 27(8): 185-196.

    XIE Z J, ZHOU C H, HE Y Q, et al. A review of Astragalus sinicus in paddy fields in South China since 2000s[J]. Acta Prataculturae Sinica, 2018, 27(8): 185-196. (in Chinese)
    [3]
    BREWIN N J. Development of the legume root nodule[J]. Annual Review of Cell Biology, 1991, 7: 191-226.
    [4]
    MARTÍNEZ-HIDALGO P, HIRSCH A M. The nodule microbiome: N2-fixing rhizobia do not live alone [J]. Phytobiomes Journal, 2017, 1(2): 70−82. doi: 10.1094/PBIOMES-12-16-0019-RVW
    [5]
    PREYANGA R, ANANDHAM R, KRISHNAMOORTHY R, et al. Groundnut (Arachis hypogaea) nodule Rhizobium and passenger endophytic bacterial cultivable diversity and their impact on plant growth promotion[J]. Rhizosphere, 2021, 17: 100309.
    [6]
    WILSON D. Endophyte: The evolution of a term, and clarification of its use and definition [J]. Oikos, 1995, 73(2): 274. doi: 10.2307/3545919
    [7]
    MIRANDA-SÁNCHEZ F, RIVERA J, VINUESA P. Diversity patterns of Rhizobiaceae communities inhabiting soils, root surfaces and nodules reveal a strong selection of rhizobial partners by legumes [J]. Environmental Microbiology, 2016, 18(8): 2375−2391. doi: 10.1111/1462-2920.13061
    [8]
    张爱梅, 殷一然, 孔维宝, 等. 基于高通量测序分析西藏沙棘根瘤内生菌的多样性 [J]. 生态学报, 2021, 41(20):8212−8221.

    ZHANG A M, YIN Y R, KONG W B, et al. Diversity of endophytes associated with Hippophae tibetana root nodules based on high-throughput sequencing [J]. Acta Ecologica Sinica, 2021, 41(20): 8212−8221. (in Chinese)
    [9]
    魏继华, 李佳益, 刘宏, 等. 沙棘根瘤内生菌株库构建与微生物多样性分析 [J]. 浙江农林大学学报, 2022, 39(2):356−363. doi: 10.11833/j.issn.2095-0756.20210246

    WEI J H, LI J Y, LIU H, et al. Construction of endophytic strain bank of seabuckthorn nodule and an analysis of microbial diversity [J]. Journal of Zhejiang A & F University, 2022, 39(2): 356−363. (in Chinese) doi: 10.11833/j.issn.2095-0756.20210246
    [10]
    肖潇. 豆科植物根际和根瘤内生细菌群落结构、变化规律及其影响因素研究[D]. 杨凌: 西北农林科技大学, 2017.

    XIAO X. The structure, variation and influence factors of leguminous plant rhizosphere and nodule endosphere microbiome[D]. Yangling: Northwest A & F University, 2017. (in Chinese)
    [11]
    李静. 陕北地区白刺花根瘤内生菌遗传多样性及其促生特性研究[D]. 延安: 延安大学, 2022.

    LI J. Genetic diversity and growth promoting characteristics of endophytic bacteria from Sophora davidii (franch. ) skeels root nodules in northern shaanxi[D]. Yan’an: Yan’an University, 2022. (in Chinese)
    [12]
    BULGARELLI D, ROTT M, SCHLAEPPI K, et al. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota [J]. Nature, 2012, 488(7409): 91−95. doi: 10.1038/nature11336
    [13]
    LUNDBERG D S, LEBEIS S L, PAREDES S H, et al. Defining the core Arabidopsis thaliana root microbiome [J]. Nature, 2012, 488(7409): 86−90. doi: 10.1038/nature11237
    [14]
    BULGARELLI D, GARRIDO-OTER R, MÜNCH P C, et al. Structure and function of the bacterial root microbiota in wild and domesticated barley [J]. Cell Host & Microbe, 2015, 17(3): 392−403.
    [15]
    CHEN S F, ZHOU Y Q, CHEN Y R, et al. Fastp: An ultra-fast all-in-one FASTQ preprocessor[J]. Bioinformatics, 2018, 34(17): i884-i890.
    [16]
    MAGOČ T, SALZBERG S L. FLASH: Fast length adjustment of short reads to improve genome assemblies[J]. Bioinformatics, 2011, 27(21): 2957-2963.
    [17]
    EDGAR R C. UPARSE: Highly accurate OTU sequences from microbial amplicon reads[J]. Nature Methods, 2013, 10: 996-998.
    [18]
    COLE J R, WANG Q, FISH J A, et al. Ribosomal Database Project: Data and tools for high throughput rRNA analysis[J]. Nucleic Acids Research, 2014, 42(Database issue): D633-D642.
    [19]
    曹卫东, 高嵩涓. 到2025年中国绿肥发展策略 [J]. 中国农业资源与区划, 2023, 44(12):1−9.

    CAO W D, GAO S J. Chinese green manure development strategy by 2025 [J]. Chinese Journal of Agricultural Resources and Regional Planning, 2023, 44(12): 1−9. (in Chinese)
    [20]
    RAHIMLOU S, BAHRAM M, TEDERSOO L. Phylogenomics reveals the evolution of root nodulating alpha- and beta-Proteobacteria (rhizobia)[J]. Microbiological Research, 2021, 250: 126788.
    [21]
    PANG J F, PALMER M, SUN H J, et al. Diversity of root nodule-associated bacteria of diverse legumes along an elevation gradient in the Kunlun Mountains, China[J]. Frontiers in Microbiology, 2021, 12: 633141.
    [22]
    ZHANG J J, SHANG Y M, LIU C Z, et al. Mesorhizobium jarvisii is a dominant and widespread species symbiotically efficient on Astragalus sinicus L. in the Southwest of China[J]. Systematic and Applied Microbiology, 2020, 43(5): 126102.
    [23]
    尚益民. 我国豆科绿肥共生根瘤菌多样性分析与优势菌种资源挖掘[D]. 郑州: 郑州轻工业大学, 2020

    SHANG Y M. The diversity analysis of legume green manure symbiotic rhizobia and mining of dominant species resources in china[D]. Zhengzhou: Zhengzhou University of Light Industry, 2020. (in Chinese)
    [24]
    TAPIA-GARCÍA E Y, HERNÁNDEZ-TREJO V, GUEVARA-LUNA J, et al. Plant growth-promoting bacteria isolated from wild legume nodules and nodules of Phaseolus vulgaris L. trap plants in central and southern Mexico[J]. Microbiological Research, 2020, 239: 126522.
    [25]
    SANTOYO G, DEL CARMEN OROZCO-MOSQUEDA M, GOVINDAPPA M. Mechanisms of biocontrol and plant growth-promoting activity in soil bacterial species ofBacillusandPseudomonas: A review[J]. Biocontrol Science and Technology, 2012, 22(8): 855-872.
    [26]
    BIESSY A, FILION M. Phenazines in plant-beneficial Pseudomonas spp. : Biosynthesis, regulation, function and genomics[J]. Environmental Microbiology, 2018, 20(11): 3905-3917.
    [27]
    张学贤, 李阜棣, 曹燕珍, 等. 紫云英根瘤菌分子遗传学研究进展 [J]. 华中农业大学学报, 2003, 22(1):77−83. doi: 10.3321/j.issn:1000-2421.2003.01.018

    ZHANG X X, LI F D, CAO Y Z, et al. Molecular genetics of Astragalus sincus rhizobia [J]. Journal of Huazhong Agricultural, 2003, 22(1): 77−83. (in Chinese) doi: 10.3321/j.issn:1000-2421.2003.01.018
    [28]
    张俊杰, 彭姗姗, 尚益民, 等. 湖南益阳地区紫云英根瘤菌的遗传多样性研究 [J]. 河南农业大学学报, 2020, 54(3):480−487.

    ZHANG J J, PENG S S, SHANG Y M, et al. Study on genetic diversity of rhizobia associated with Astragalus sinicus L. from Yiyang, Hunan Province [J]. Journal of Henan Agricultural University, 2020, 54(3): 480−487. (in Chinese)
    [29]
    HUANG H C, HSIEH T F, ERICKSON R S. Biology and epidemiology of Erwinia rhapontici, causal agent of pink seed and crown rot of plants [J]. Plant Pathology Bulletin, 2003, 12: 69−76.
    [30]
    COTHER E J, NOBLE D H, VAN DE VEN R J, et al. Bacterial pathogens of rice in the Kingdom of Cambodia and description of a new pathogen causing a serious sheath rot disease[J]. Plant Pathology, 2010, 59(5): 944-953.
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Figures(5)  / Tables(1)

    Article Metrics

    Article views (72) PDF downloads(6) Cited by()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return