Recent Advancements in Taxonomy of <i>Bacillus</i>-like Bacteria:An Updated Review in 2016

WANG Jie-ping; LIU Bo; LIU Guo-hong; YU Zi-niu; TAO Tian-shen

doi:10.19303/j.issn.1008-0384.2017.07.018

Volume 32 Issue 7

Oct. 2017

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Article Navigation > Fujian Journal of Agricultural Sciences > 2017 > 32(7): 784-800

WANG Jie-ping, LIU Bo, LIU Guo-hong, YU Zi-niu, TAO Tian-shen. Recent Advancements in Taxonomy of Bacillus-like Bacteria:An Updated Review in 2016[J]. Fujian Journal of Agricultural Sciences, 2017, 32(7): 784-800. doi: 10.19303/j.issn.1008-0384.2017.07.018

Citation:

WANG Jie-ping, LIU Bo, LIU Guo-hong, YU Zi-niu, TAO Tian-shen. Recent Advancements in Taxonomy of Bacillus-like Bacteria:An Updated Review in 2016[J]. Fujian Journal of Agricultural Sciences, 2017, 32(7): 784-800. doi: 10.19303/j.issn.1008-0384.2017.07.018

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Recent Advancements in Taxonomy of Bacillus-like Bacteria:An Updated Review in 2016

doi: 10.19303/j.issn.1008-0384.2017.07.018

1.
Agricultural Bio-Resources Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350012, China
2.
College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China
3.
College of Life Science, Wuhan University, Wuhan, Hubei 430070, China

Received Date: 2016-12-12
Rev Recd Date: 2017-01-14
Publish Date: 2017-07-28

Abstract

Abstract

In the paper authored by Liu et al. that entitled, "List of species names for the Bacillus-like bacteria", the Bacillus-like bacteria were collated up to the end of December 2014. It included 71 genera and 752 species with only those contained a suffix "bacillus". This article updated the taxonomic information on the Bacillus-like bacteria to include (1) the species number, changes in systematic status, and new species reported in 2015-2016 on each genus with the suffix "bacillus"; (2) the progress on taxonomy of the spore-forming genera without the suffix "bacillus" in 7 families, and (3) the classification of the non-Bacillus-like genera with a suffix "bacillus". By year-end 2016, at least 8 families were included in the order of Bacillales. They were Bacillaceae (69 genera and 604 species), Alicyclobacillaceae (6 genera and 46 species), Paenibacillaceae (10 genera and 321 species), Pasteuriaceae (1 genera and 4 species), Planococcaceae (15 genera and 49 species), Sporolactobacillaceae (6 genera and 20 species), Thermoactinomycetaceae (17 genera and 36 species), and an unestablished family (1 genus and 2 species). Among them, the species in 13 genera were not endospore-forming bacteria.Therefore the total number of the spore-forming Bacillus-like bacteria reached up to 1 078 species and 112 genera within 8 families.
- Bacillus-like bacteria,
- systematic taxonomy,
- new species,
- suffix "bacillus"

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References(30)

References

[1]	CLAUS D, BERKLEY R C W.Genus Bacillus Cohn 1872, 174AL[C]//Sneath P H A, Mair N S, Sharpe M E, Holt J G (ed). Bergey's mannual of systermatics bacteriology, vol 2.[M]. Baltimore:Williams & Wilkins, 1986:1105-1139.
[2]	MAUGHAN H, VAN DER AUWERA G. Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading[J].Infection, Genetics and Evolution, 2011, 11:789-797. doi: 10.1016/j.meegid.2011.02.001
[3]	DE VOS P, GARRITY GM, JONES D, et al. Volume Three:The Firmicutes.[C]//Bergey's Manual of Systematic Bacteriology 2nd ed[M]. Baltimore:Williams & Wilkins, 2009:1-1422.
[4]	LPSN-List of Prokaryotic names with Standing in Nomenclature[CP/DK].http://www.bacterio.net/.
[5]	Wikipedia-the free encyclopedia[CP/DK].https://en.wikipedia.org/wiki/.
[6]	NCBI-National Center for Biotechnology Information[CP/DK]. https://www.ncbi.nlm.nih.gov/taxonomy/.
[7]	COHN F. Studies on the biology of the bacilli. In:Brock, T.D. (Ed.), Milestones in Microbiology[M]. Prentice-Hall, Inc., Englewood Cliffs, N.J, 1962:49-56.
[8]	韩延平, 杨瑞馥.需氧芽胞杆菌分类学研究进展[J].微生物学免疫学进展, 2001, 29(4):73-78. http://mall.cnki.net/magazine/Article/WSMY200104019.htm
[9]	LOGAN N A, BERGE O, BISHOP A H, et al. Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria[J]. Int J Syst Evol Microbiol, 2009, 59:2114-2121. doi: 10.1099/ijs.0.013649-0
[10]	刘波, 王阶平, 陶天申, 等.芽胞杆菌属及其近缘属种名目录[J].福建农业学报, 2015, 30(1):38-59. http://www.fjnyxb.cn/CN/abstract/abstract2607.shtml
[11]	刘波, 陶天申, 王阶平, 等. 《芽胞杆菌》第二卷《芽胞杆菌分类学》[M].北京:科学出版社, 2016.
[12]	STACKEBRANDT E. The Family Alicyclobacillaceae.[C]//DeLong EF, Lory S, Stackebrandt E, Thompson F. (Eds.) The Prokaryotes[M].Berlin:Springer, 2014:7-12.
[13]	MAYILRAJ S, STACKEBRANDT E. The Family Paenibacillaceae[C]//DeLong EF, Lory S, Stackebrandt E, Thompson F. (Eds.) The Prokaryotes[M]. Berlin:Springer, 2014:267-280.
[14]	SHIVAJI S, SRINIVAS T N R, REDDY G S N. The Family Planococcaceae[C]//DeLong EF, Lory S, Stackebrandt E, Thompson F. (Eds.) The Prokaryotes[M]. Berlin:Springer, 2014:303-351.
[15]	CHANG Y H, STACKEBRANDT E. The Family Sporolactobacillaceae[C]//DeLong EF, Lory S, Stackebrandt E, Thompson F. (Eds.) The Prokaryotes[M].Berlin:Springer, 2014:353-362.
[16]	TSILINSKY P. On the thermophilic moulds[J]. Ann Inst Pasteur, 1899, 13:500-505(in French). https://link.springer.com/content/pdf/bfm%3A978-94-015-9206-2%2F1.pdf
[17]	HATAYAMA K, SHOUN H, UEDA Y, et al. Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost[J]. Int J Syst Evol Microbiol, 2005, 55(5):2101-2104. doi: 10.1099/ijs.0.63367-0
[18]	CROSS T, WALKER P D, GOULD G W. Thermophilic actinomycetes producing resistant endospores[J]. Nature, 1968, 220(5165):352-354. doi: 10.1038/220352a0
[19]	STACKEBRANDT E, WOESE C R. The phylogeny of prokaryotes[J]. Microbiol Sci, 1984, 1(5):117-122. http://science.sciencemag.org/content/209/4455/457
[20]	YOON J H, KIM I G, SHIN Y K, et al. Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses[J]. Int J Syst Evol Microbiol, 2005, 55(1):395-400. doi: 10.1099/ijs.0.63203-0
[21]	MATSUO Y, KATSUTA A, MATSUDA S, et al. Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov.[J]. Int J Syst Evol Microbiol, 2006, 56(12):2837-2842. doi: 10.1099/ijs.0.64223-0
[22]	YASSIN A F, HUPFER H, KLENK H P, et al. Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006[J]. Int J Syst Evol Microbiol, 2009, 59(3):454-459. doi: 10.1099/ijs.0.001362-0
[23]	CARRILLO L, BENíTEZ-AHRENDTS M R. The Family Thermoactinomycetaceae[C]//DeLong EF, Lory S, Stackebrandt E, Thompson F. (Eds.) The Prokaryotes[M].Berlin:Springer, 2014:389-410.
[24]	YANG G, CHEN J, ZHOU S. Novibacillus thermophilus gen. nov., sp. nov., a Gram-staining-negative and moderately thermophilic member of the family Thermoactinomycetaceae[J]. Int J Syst Evol Microbiol, 2015, 65(8):2591-2597. doi: 10.1099/ijs.0.000306
[25]	SOROKIN D Y, TOUROVA T P, SUKHACHEVA M V, et al. Desulfuribacillus alkaliarsenatis gen. nov. sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes[J]. Extremophiles, 2012, 16(4):597-605. doi: 10.1007/s00792-012-0459-7
[26]	ABIN C A, HOLLIBAUGH J T. Desulfuribacillus stibiiarsenatis sp. nov., an obligately anaerobic, dissimilatory antimonate-and arsenate-reducing bacterium isolated from anoxic sediments, and emended description of the genus Desulfuribacillus[J]. Int J Syst Evol Microbiol, 2017, 67(4):1011-1017. doi: 10.1099/ijsem.0.001732
[27]	SKERMAN V B D, MCGOWAN V, SNEATH P H A. Approved lists of bacterial names[J]. Int J Syst Bacteriol, 1980, 30:225-420. doi: 10.1099/00207713-30-1-225
[28]	ÑANCUCHEO I, OLIVEIRA R, DALL'AGNOL H, et al. Draft Genome Sequence of a Novel Acidophilic Iron-Oxidizing Firmicutes Species, "Acidibacillus ferrooxidans" (SLC66^T)[J]. Genome Announc, 2016, 4(3):e00383-16.
[29]	LAL D, KHAN F, GUPTA S K, et al. Edaphobacillus lindanitolerans gen. nov., sp. nov., isolated from hexachlorocyclohexane (HCH) contaminated soil[J]. J Basic Microbiol, 2013, 53(9):758-765. doi: 10.1002/jobm.201200150
[30]	SCHMIDT M, PRIEMÉ A, JOHANSEN A, et al. Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland[J]. Extremophiles, 2012, 16(2):297-305. doi: 10.1007/s00792-012-0430-7