A Preliminary Report on Genomics of <i>Vitis davidii</i> Foëx from Fuan District UsingHigh-throughput Genome Sequencing Method

CHEN Ting; ZHOU Ping; LIU Xin-ming; CAI Sheng-hua; LEI Yan

doi:10.19303/j.issn.1008-0384.2017.02.006

Volume 32 Issue 2

Apr. 2017

Turn off MathJax

Article Contents

Article Navigation > Fujian Journal of Agricultural Sciences > 2017 > 32(2): 134-137

CHEN Ting, ZHOU Ping, LIU Xin-ming, CAI Sheng-hua, LEI Yan. A Preliminary Report on Genomics of Vitis davidii Foëx from Fuan District UsingHigh-throughput Genome Sequencing Method[J]. Fujian Journal of Agricultural Sciences, 2017, 32(2): 134-137. doi: 10.19303/j.issn.1008-0384.2017.02.006

Citation:

CHEN Ting, ZHOU Ping, LIU Xin-ming, CAI Sheng-hua, LEI Yan. A Preliminary Report on Genomics of Vitis davidii Foëx from Fuan District UsingHigh-throughput Genome Sequencing Method[J]. Fujian Journal of Agricultural Sciences, 2017, 32(2): 134-137. doi: 10.19303/j.issn.1008-0384.2017.02.006

Citation:

PDF( 1070 KB)

A Preliminary Report on Genomics of Vitis davidii Foëx from Fuan District UsingHigh-throughput Genome Sequencing Method

doi: 10.19303/j.issn.1008-0384.2017.02.006

Fruit Research Institute, Fujian Academy of Agriculture Science, Fuzhou, Fujian 350013, China

Received Date: 2016-10-11
Rev Recd Date: 2016-12-18
Publish Date: 2017-02-01

Abstract

Abstract

Genetic variants in Vitis davidii from Fuan District in Fujian were studied using the high-throughput genome sequencing method. The 8.4 Gb of raw data were analyzed to result in the identification of 3 192 484 non-redundant genetic variants. Distribution of the variants showed 30.34% in the intergenic regionand 3.67% in the exon region. By comparing the genome sequences of the V. davidii under study with those of the entire grape references, 1 863 237 homo-type SNP and 1 244 590 hetero-type SNP were found. It appeared that the V. davidii from Fuan were most likely to be allodiploidy. The study also indicated that using genetic sequencing to determine the genome-wide variants of V. davidii was a viable tool for better understanding of the genetic background of the plant in question.
- high-throughput sequencing,
- Vitis davidii,
- genome

FullText(HTML)

References(19)

References

[1]	孔庆山.中国葡萄志[M].北京:中国农业科学技术出版社, 2004:28.
[2]	李以训, 袁韬, 薛晓虹.福建福安市刺葡萄的开发利用及栽培技术[J].中国南方果树, 2008, 37(4):68-69. http://www.cnki.com.cn/Article/CJFDTOTAL-FRUI200804033.htm
[3]	THE FRENCH-ITALIAN PUBLIC CONSORTIUM FOR GRAPEVINE GENOME CHARACTERIZATION. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla[J]. Nature, 2007, 449:463-468. doi: 10.1038/nature06148
[4]	ADAM-BLONDON A, WEISSENBACH J, PE E, et al. A major advance in plant biology: the grapevine genome is completely sequenced[J]. Press Release, Paris, . http://www2.cnrs.fr/en/977.htm
[5]	贺普超.葡萄学[M].北京:中国农业出版社, 2001.
[6]	贺普超, 晁无疾.我国葡萄野生种的抗病性研究[J].中国果树, 1982, (4):17-20. http://www.cnki.com.cn/Article/CJFDTOTAL-ZGGS198204007.htm
[7]	张浦亭, 范邦文, 余烈, 等.刺葡萄品种'塘尾葡萄'[J].中国果树, 1985, (1):32-34. http://www.cnki.com.cn/Article/CJFDTOTAL-ZGGS198501011.htm
[8]	张浦亭, 罗家信, 贺开业.雪峰刺葡萄的发现与研究[J].湖南农业科学, 1989, (6):27-28. http://www.cnki.com.cn/Article/CJFDTOTAL-HNNK198906009.htm
[9]	熊兴耀, 王仁才, 孙武积, 等.葡萄新品种'紫秋'[J].园艺学报, 2006, 33(5):1165. http://www.cnki.com.cn/Article/CJFDTOTAL-FRUI200701033.htm
[10]	石雪晖, 杨国顺, 倪建军, 等.刺葡萄新类型——水晶刺葡萄的生物学性状研究[J].中外葡萄与葡萄酒, 2008, (5):60-62. http://www.cnki.com.cn/Article/CJFDTOTAL-PTZP200805007.htm
[11]	王道平, 雷龑, 施金全, 等.惠良刺葡萄性状表现及其分子鉴定[J].东南园艺, 2013, (3):40-42. http://www.cnki.com.cn/Article/CJFDTOTAL-FJGS201303013.htm
[12]	黄乐, 王美军, 蒋建雄, 等.刺葡萄花器官形态特征研究[J].湖南农业科学, 2013, (15):31-33. doi: 10.3969/j.issn.1006-060X.2013.15.010
[13]	程大伟, 姜建福, 樊秀彩, 等.中国葡萄属植物野生种多样性分析[J].植物遗传资源学报, 2013, 14(6):996-1012. http://www.cnki.com.cn/Article/CJFDTOTAL-ZWYC201306004.htm
[14]	罗彬彬, 石雪晖, 杨国顺, 等.湖南省部分地区刺葡萄调查及植物学性状观测[J].中外葡萄与葡萄酒, 2010, (3):17-23. http://www.cnki.com.cn/Article/CJFDTOTAL-PTZP201009005.htm
[15]	万怡震, 乔飞, 贺普超.中国野生葡萄种子及果皮单宁的研究[J].西北农林科技大学学报:自然科学版, 2001, 29(6):43-45. http://www.cnki.com.cn/Article/CJFDTOTAL-XBNY200106009.htm
[16]	焦健, 刘崇怀, 樊秀彩, 等.中国野生种葡萄mybA转录因子SNP特征分析[J].植物遗传资源学报, 2013, 14(5):885-891. http://www.cnki.com.cn/Article/CJFDTOTAL-ZWYC201305034.htm
[17]	张萌. 基于SSR分子标记的葡萄种质资源遗传多样性分析及品种鉴定[D]. 南京: 南京农业大学, 2012.
[18]	刘昆玉, 徐丰, 石雪晖, 等.基于SRAP标记的刺葡萄亲缘关系分析[J].湖南农业大学学报:自然科学版, 2012, 38(6):607-611. http://www.cnki.com.cn/Article/CJFDTOTAL-HNND201206009.htm
[19]	张旭彤. 中国野生葡萄种质资源的亲缘关系研究[D]. 杨凌: 西北农林科技大学, 2012.