Bioinformatics and Identification of eIF5A Gene Family in Phalaenopsis equestris (Schauer) Rchb. f.

ZHANG Jie-wei; TANG Jiu-yang; CHEN Lan-fen; WANG Ning-lin; WANG Hong-zhi; WEI Jian-hua

doi:10.19303/j.issn.1008-0384.2017.011.010

Volume 32 Issue 11

Jan. 2018

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Article Navigation > Fujian Journal of Agricultural Sciences > 2017 > 32(11): 1218-1223

ZHANG Jie-wei, TANG Jiu-yang, CHEN Lan-fen, WANG Ning-lin, WANG Hong-zhi, WEI Jian-hua. Bioinformatics and Identification of eIF5A Gene Family in Phalaenopsis equestris (Schauer) Rchb. f.[J]. Fujian Journal of Agricultural Sciences, 2017, 32(11): 1218-1223. doi: 10.19303/j.issn.1008-0384.2017.011.010

Citation:

ZHANG Jie-wei, TANG Jiu-yang, CHEN Lan-fen, WANG Ning-lin, WANG Hong-zhi, WEI Jian-hua. Bioinformatics and Identification of eIF5A Gene Family in Phalaenopsis equestris (Schauer) Rchb. f.[J]. Fujian Journal of Agricultural Sciences, 2017, 32(11): 1218-1223. doi: 10.19303/j.issn.1008-0384.2017.011.010

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Bioinformatics and Identification of eIF5A Gene Family in Phalaenopsis equestris (Schauer) Rchb. f.

doi: 10.19303/j.issn.1008-0384.2017.011.010

1.
Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
2.
Beijing Vocational College of Agriculture, Beijing, 102442, China
3.
Zhejiang Business College, Hangzhou, Zhejiang 310083, China

Received Date: 2017-07-25
Rev Recd Date: 2017-09-04
Publish Date: 2017-11-28

Abstract

Abstract

To understand the functions of eIF5A gene family in Phalaenopsis equestris, the genome database and bioinformatics were applied to obtain their gene structures, coded proteins, and predicted phosphorylation sites for analysis. The results showed that the eIF5A1 and eIF5A2 genes in P. equestris genome contained 5 and 6 extrons, respectively. The multiple alignments and motif displays rendered from the MEME method indicated that all PeeIF5A1 and PeeIF5A2 proteins contained one conserved DNA binding OB binding motif, PF01287. The phosphorylation site prediction on the proteins showed numerous sites.These results would provide the important clues for functional studies to reveal the role of PeeIF5A1 and PeeIF5A2 proteins in P.equestris.
- Phalaenopsis equestris,
- eIF5A,
- gene family,
- phylogeny analysis

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References(23)

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