Citation: | DING Xiao-chun, CHEN Wei-xin, LI Xue-ping. Research Progress of Protein-protein Interaction Technology A Research Review of the Technology of Protein-protein Interaction[J]. Fujian Journal of Agricultural Sciences, 2016, 31(10): 1131-1138. doi: 10.19303/j.issn.1008-0384.2016.10.024 |
[1] |
蒋英芝, 贺连华, 刘建军.蛋白质功能研究方法及技术[J].生物技术通报, 2009, (9):38-43. http://www.cnki.com.cn/Article/CJFDTOTAL-SWJT200909007.htm
|
[2] |
孙宇, 贾凌云, 任军.蛋白质相互作用的研究方法[J].分析化学, 2007, 35(5):760-766. http://www.cnki.com.cn/Article/CJFDTOTAL-YJZY201104102.htm
|
[3] |
UHRIG J F. Protein interaction networks in plants[J]. Planta, 2006, 224(4):771-781. doi: 10.1007/s00425-006-0260-x
|
[4] |
BRAUN P, GINGRAS A C. History of protein-protein interactions:from egg-white to complex networks[J]. Proteomics, 2012, 12(10):1478-1498. doi: 10.1002/pmic.201100563
|
[5] |
涂占晗, 林旭.蛋白质相互作用研究的常用方法进展及比较[J].中国当代医药, 2012, 19(14):18-20. http://www.cnki.com.cn/Article/CJFDTOTAL-ZGUD201214012.htm
|
[6] |
JANIN J, BONVIN A M. Protein-Protein Interactions[J]. Current opinion in structural biology, 2013, 23(6):859. doi: 10.1016/j.sbi.2013.10.003
|
[7] |
OFRAN Y, ROST B. Predicted protein-protein interaction sites from local sequence information[J]. FEBS Lett, 2003, 544(1-3):236-239. doi: 10.1016/S0014-5793(03)00456-3
|
[8] |
陈玉, 刘鹏, 陈由强, 等.基因芯片技术在水稻抗逆基因表达研究中的应用[J].福建农业学报, 2012, 27(12):1395-1400. http://www.cnki.com.cn/Article/CJFDTOTAL-FJNX201212025.htm
|
[9] |
VAN DIECK J, SCHMID V, HEINDL D, et al. Development of Bispecific Molecules for the In Situ Detection of Protein-Protein Interactions and Protein Phosphorylation[J]. Chemistry & biology, 2014, 21(3):357-368. https://www.ncbi.nlm.nih.gov/pubmed/24529991
|
[10] |
JANIN J, BONVIN A M. Protein-Protein Interactions[J]. Current opinion in structural biology, 2013, 23(6):859. doi: 10.1016/j.sbi.2013.10.003
|
[11] |
CHARLOTEAUX B, ZHONG Q, DREZE M, et al. Protein-protein interactions and networks:forward and reverse edgetics[M]. Yeast Systems Biology, Springer, 2011:197-213.
|
[12] |
TUNCBAG N, GURSOY A, NUSSINOV R, et al. Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM[J]. Nature protocols, 2011, 6(9):1341-1354. doi: 10.1038/nprot.2011.367
|
[13] |
王煜涵.稻瘟菌MAP蛋白酶互作蛋白的鉴定与分析[D].长春:吉林大学, 2013. http://cdmd.cnki.com.cn/Article/CDMD-10183-1013196214.htm
|
[14] |
MAEDA K, POLETTO M, CHIAPPARINO A, et al. A generic protocol for the purification and characterization of water-soluble complexes of affinity-tagged proteins and lipids[J]. Nat Protoc, 2014, 9(9):2256-2266. doi: 10.1038/nprot.2014.148
|
[15] |
江月, 丛浩龙, 王健, 等.串联亲和纯化技术筛选肠病毒71型3D聚合酶的相互作用蛋白[J].第三军医大学学报, 2012, 34(6):526-529. http://www.cnki.com.cn/Article/CJFDTOTAL-DSDX201206019.htm
|
[16] |
MORTENSEN L S, SCHMIDT H, FARSI Z, et al. KV 10.1 opposes activity-dependent increase in Ca2+ influx into the presynaptic terminal of the parallel fibre-Purkinje cell synapse[J]. J Physiol, 2015, 593(1):181-196. https://www.researchgate.net/profile/Hartmut_Schmidt/publication/267103722_KV10.1_opposes_activity-dependent_increase_in_Ca2_influx_into_the_presynaptic_terminal_of_the_parallel_fibre__Purkinje_cell_synapse/links/5655a46308ae1ef929772eb9.pdf?origin=publication_list
|
[17] |
王淼, 薛巧如, 姚敏菲, 等.高效亲和色谱法测定静注人免疫球蛋白IgG[J].今日药学, 2010, (4):31-33. http://www.cnki.com.cn/Article/CJFDTOTAL-YAXU201004017.htm
|
[18] |
何媛.功能蛋白与药物相互作用的亲和色谱法研究[D].西安:西北大学, 2012. http://cdmd.cnki.com.cn/Article/CDMD-10697-1012442255.htm
|
[19] |
郭纯.免疫共沉淀技术的研究进展[J].中医药导报, 2007, (12):86-89. http://www.cnki.com.cn/Article/CJFDTOTAL-NMYZ200804027.htm
|
[20] |
柴政斌, 张更林, 韩金祥. GST-pull down技术在蛋白质相互作用中的应用[J].中国生物制品学杂志, 2014, (10):1354-1358. http://www.cnki.com.cn/Article/CJFDTOTAL-SWZP201410034.htm
|
[21] |
郭纯.免疫共沉淀技术的研究进展[J].中医药导报, 2007, (12):86-89. http://www.cnki.com.cn/Article/CJFDTOTAL-NMYZ200804027.htm
|
[22] |
鹿连明, 秦梅玲, 王萍, 等.利用免疫共沉淀技术研究RSV CP、SP和NSvc4蛋白的互作[J].农业生物技术学报, 2008, 16(5):891-897. http://www.cnki.com.cn/Article/CJFDTOTAL-NYSB200805029.htm
|
[23] |
刘东擘, 李生茂, 梁华平, 等. GST Pull-down试验鉴定NF-κB相互作用多肽[J].免疫学杂志, 2006, 22(1):94-97. http://www.cnki.com.cn/Article/CJFDTOTAL-MYXZ200601026.htm
|
[24] |
高燕, 杨松光, 崔玉海, 等.拟南芥染色质重塑因子AtBRM和AtSWI3C基因的克隆及生物信息学分析[J].广东农业科学, 2012, (14):131-135. http://www.cnki.com.cn/Article/CJFDTOTAL-GDNY201214042.htm
|
[25] |
孙平, 张逢春, 张影.蛋白质芯片技术的研究及应用现状[J].北华大学学报:自然科学版, 2009, (2):115-120. http://www.cnki.com.cn/Article/CJFDTOTAL-ZJYB200501019.htm
|
[26] |
WUCHTY S, UETZ P. Protein-protein Interaction Networks of E.coli and S.cerevisiae are similar[J]. Scientific Reports, 2014, (4):7187. https://www.ncbi.nlm.nih.gov/pubmed/25431098
|
[27] |
FOFFI G, PASTORE A, PIAZZA F, et al. Macromolecular crowding:chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012)[J]. Physical Biology, 2013, 10(4):40301. doi: 10.1088/1478-3975/10/4/040301
|
[28] |
潘虹, 雷珍珍, 许可静, 等.绿色荧光蛋白在微生物与植物互作研究中的应用研究进展[J].广东农业科学, 2012, (3):150-153. http://www.cnki.com.cn/Article/CJFDTOTAL-GDNY201203056.htm
|
[29] |
张洁, 柳长柏.蛋白片段互补分析方法及其应用[J].生物技术通报, 2013, (2):67-71. http://www.cnki.com.cn/Article/CJFDTOTAL-SWJT201302010.htm
|
[30] |
LEVY E D, MICHNICK S W, LANDRY C R. Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information[J]. Philosophical Transactions of the Royal Society B:Biological Sciences, 2012, 367(1602):2594-2606. doi: 10.1098/rstb.2012.0078
|
[31] |
董金华, 唐玉海, 乔宁, 等.噬菌体展示抗克伦特罗抗体文库的构建及单克隆抗体的筛选[J].生物技术通报, 2014, (2):136-142. http://www.cnki.com.cn/Article/CJFDTOTAL-SWJT201402023.htm
|
[32] |
张莉.光散射技术在蛋白质分析与纳米微粒表征中的应用[D].重庆:西南大学, 2007.
|
[33] |
李永宏, 廉芬, 王文鹏, 等.一种可用于轻气炮加载试验中的光散射测试技术[J].光散射学报, 2015, (1):121-124. http://www.cnki.com.cn/Article/CJFDTOTAL-GSSX201501009.htm
|
[34] |
黄芳, 黄晓兰, 林晓珊, 等.高效液相色谱-核磁共振光谱法测定纺织品及纺织助剂中烷基酚聚氧乙烯醚[J].理化检验:化学分册, 2007, (1):5-7. http://www.cnki.com.cn/Article/CJFDTOTAL-LHJH200701001.htm
|
[35] |
王新, 薛玉.核磁共振光谱分析技术及其在浆纸研究中的应用简述[J].中小企业管理与科技:下旬刊, 2012, (10):141-142. http://www.cnki.com.cn/Article/CJFDTOTAL-ZXQX201210095.htm
|
[36] |
金晨婷, 武光亮.核磁共振技术在蛋白质-配体相互作用研究中的应用[J].宁波化工, 2011, (1):9-14. http://www.cnki.com.cn/Article/CJFDTOTAL-NBHG201101008.htm
|
[37] |
HU Y, JIANG L, WANG F, et al. Jasmonate Regulates the INDUCER OF CBF EXPRESSION-C-REPEAT BINDING FACTOR/DRE BINDING FACTOR1 Cascade and Freezing Tolerance in Arabidopsis[J]. The Plant Cell, 2013, 25(8):2907-2924. doi: 10.1105/tpc.113.112631
|
[38] |
秦宝明, 罗述金, 米志勇, 等.酵母双杂合系统的改进和发展[J].生物工程进展, 1998, (4):2-9. http://www.cnki.com.cn/Article/CJFDTOTAL-SWGJ804.000.htm
|
[39] |
刘长仁, 刘伟, 翟金玲, 等.拟南芥AtGRP7基因诱饵载体的构建及酵母双杂的初筛[J].热带生物学报, 2012, (2):121-125. http://www.cnki.com.cn/Article/CJFDTOTAL-HNNX201202008.htm
|
[40] |
訾亮, 洪灏, 翟金玲, 等.拟南芥NiNJA基因酵母双杂诱饵载体构建及互作蛋白的筛选[J].热带生物学报, 2013, 4(1):31-35. http://www.cnki.com.cn/Article/CJFDTOTAL-HNNX201301008.htm
|
[41] |
龙皎月.番茄乙烯信号转导组分EIN3互作蛋白LeEBFs的基因克隆和功能研究[D].重庆:重庆大学, 2008.
|
[42] |
GUY E, LAUTIER M, CHABANNES M, et al. xopAC-triggered Immunity against Xanthomonas Depends on Arabidopsis Receptor-Like Cytoplasmic Kinase Genes PBL2 and RIPK[J]. PLOS ONE, 2013, 8:e734698. https://www.ncbi.nlm.nih.gov/pubmed/23951354
|
[43] |
LIU J, ZHANG J, JIA C, et al. The interaction of banana MADS-box protein MuMADS1 and ubiquitin-activating enzyme E-MuUBA in post-harvest banana fruit[J]. Plant Cell Reports. 2013, 32(1):129-137. doi: 10.1007/s00299-012-1347-4
|
[44] |
李渝萍, 陈敏, 陈彬, 等.利用酵母双杂合系统筛选与hERRα1相互作用的蛋白质[J].第三军医大学学报, 2003, (15):1352-1354. http://www.cnki.com.cn/Article/CJFDTOTAL-DSDX200315017.htm
|
[45] |
PEDAMALLU C S, POSFAI J. Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information[J]. Source Code Biol Med, 2010, 5(1):8. doi: 10.1186/1751-0473-5-8
|
[46] |
SHOKEIR T. Impact of luteal phase hysteroscopy and concurrent endometrial biopsy on subsequent IVF cycle outcome[J]. Archives of Gynecology and Obstetrics. 2014, 290(2):369-374. doi: 10.1007/s00404-014-3211-y
|
[47] |
TROISI R, GANMAA D, DOS SANTOS SILVA I, et al. The Role of Hormones in the Differences in the Incidence of Breast Cancer between Mongolia and the United Kingdom[J]. PLoS ONE, 2014, 9(12):e114455. doi: 10.1371/journal.pone.0114455
|
[48] |
艾观华, 周建红, 方慧生.基于蛋白质序列预测蛋白质-蛋白质相互作用位点研究进展[J].药物生物技术, 2011, (2):165-169. http://www.cnki.com.cn/Article/CJFDTOTAL-YWSW201102018.htm
|
[49] |
SKRABANEK L, SAINI H K, BADER G D, et al. Computational prediction of protein-protein interactions[J]. Molecular biotechnology, 2008, 38(1):1-17. doi: 10.1007/s12033-007-0069-2
|
[50] |
KANNO E, ISHIBASHI K, KOBAYASHI H, et al. Comprehensive screening for novel rab-binding proteins by GST pull-down assay using 60 different mammalian Rabs[J]. Traffic, 2010, 11(4):491-507. doi: 10.1111/tra.2010.11.issue-4
|
[51] |
KOLLMANN C S, BAI X, TSAI C, et al. Application of Encoded Library Technology (ELT) to a Protein-Protein Interaction target:Discovery of a Potent Class of Integrin Lymphocyte Function-associated Antigen 1(LFA-1) Antagonists[J]. Bioorganic & Medicinal Chemistry, 2014, 22(7):2353-2365. https://www.researchgate.net/publication/260114245_Application_of_Encoded_Library_Technology_ELT_to_a_Protein-Protein_Interaction_target_Discovery_of_a_Potent_Class_of_Integrin_Lymphocyte_Function-associated_Antigen_1_LFA-1_Antagonists
|
[52] |
ZHANG X, WALKER R C, PHIZICKY E M, et al. Influence of Sequence and Covalent Modifications on Yeast tRNA Dynamics[J]. Journal of Chemical Theory and Computation, 2014, 10(8):3473-3483. doi: 10.1021/ct500107y
|
[53] |
GRANT T D, LUFT J R, WOLFLEY J R, et al. The Structure of Yeast Glutaminyl-tRNA Synthetase and Modeling of Its Interaction with tRNA[J]. Journal of Molecular Biology, 2013, 425(14):2480-2493. doi: 10.1016/j.jmb.2013.03.043
|
[54] |
LIU P.Exploring the Molecular Mechanism and Biomakers of Liver Cancer Based on Gene Expression Microarray[J]. Pathol Oncol Res, 2015, 21(4):1077-1083. doi: 10.1007/s12253-015-9926-7
|
[55] |
HOSUR R. A computational framework for boosting confidence in high-throughput protein-protein interaction datasets[J]. Genome Biol, 2012, 13(8):R76. doi: 10.1186/gb-2012-13-8-r76
|
[56] |
SINGH R.Struct2Net:a web service to predict protein-protein interactions using a structure-based approach[J]. Nucleic Acids Res, 2010, 38(Web Server issue):W508-515. https://www.ncbi.nlm.nih.gov/pubmed/20513650
|
[57] |
SINGH R, XU J, BERGER B.Struct2net:integrating structure into protein-protein interaction prediction[J]. Pac Symp Biocomput, 2006:403-414. doi: 10.1142/9789812701626_0037
|
[58] |
PEARSE R M.Prevention of Respiratory Insufficiency after Surgical Management (PRISM) trial:report of the protocol for a pragmatic randomised controlled trial of Continuous Positive Airway Pressure (CPAP) to prevent respiratory complications and improve survival following major abdominal surgery[J].Minerva Anestesiol, 2016, 82(10):1023-1025. http://prismtrial.org/docs/PRISM%20protocol%20v1.4%2018aug15%20final.pdf
|
[59] |
CZAJA S J.The personalized reminder information and social management system (PRISM) trial:rationale, methods and baseline characteristics[J]. Contemp Clin Trials, 2015, 40:35-46. doi: 10.1016/j.cct.2014.11.004
|
[60] |
TUNCBAG N.Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM[J]. Nat Protoc, 2011, 6(9):1341-1354. doi: 10.1038/nprot.2011.367
|
[61] |
GONZALEZ A J, LIAO l. Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines[J]. BMC Bioinformatics, 2010, 11:537. doi: 10.1186/1471-2105-11-537
|
[62] |
ZHANG Q C. PrePPI:a structure-informed database of protein-protein interactions[J]. Nucleic Acids Res, 2013, 41(Database issue):828-833. https://academic.oup.com/nar/article/41/D1/D828/1070064/PrePPI-a-structure-informed-database-of-protein
|
[63] |
ZHANG Q C.Structure-based prediction of protein-protein interactions on a genome-wide scale[J]. Nature, 2012, 490(7421):556-560. doi: 10.1038/nature11503
|
[64] |
LEE S A. POINeT:protein interactome with sub-network analysis and hub prioritization[J]. BMC Bioinformatics, 2009, 10:114. doi: 10.1186/1471-2105-10-114
|